PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595576.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 303aa    MW: 34203.9 Da    PI: 6.0683
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-3078136259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+
  XP_009595576.1  78 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 136
                     69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3174138IPR003657WRKY domain
SuperFamilySSF1182902.35E-2676138IPR003657WRKY domain
SMARTSM007744.2E-3677137IPR003657WRKY domain
PROSITE profilePS5081132.40978138IPR003657WRKY domain
PfamPF031063.8E-2679136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDGRFNNIFV SHEQEDSENS PENSLDSPRS DMFNDNKMMT STSSPKRSRR SIQKRVVSVP  60
IKEVEGTKMK GEISMPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRA  120
DPNMLVVTYS CEHNHPWPAS RNNQHNQRTT TTSCINNAKT KTKTLASLTA TTTIITTTNI  180
AVSDFERKKD TSNFASQSEP NSDENFTNLG ESSLISCNEF GWFSDFECTS TTMLESPILT  240
EVEVTDIDMS STLTTMREED DSLFADLGEL PECSRVFGRG MMERDEERRR HSLSLTSWCG  300
TLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19791381674WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023640.0DQ102364.1 Capsicum annuum WRKY-A1244 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595576.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP565e-77WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA7UGD21e-170A7UGD2_SOLTU; WRKY transcription factor 5
STRINGSolyc02g072190.2.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64752333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.19e-68WRKY DNA-binding protein 65